NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
644.4 |
| Mean read quality |
5.9 |
| Median read length |
250.0 |
| Median read quality |
6.8 |
| Number of reads |
21,262.0 |
| Read length N50 |
1,857.0 |
| STDEV read length |
2,034.7 |
| Total bases |
13,701,887.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16108 (75.8%) 10.6Mb |
| >Q7 |
9957 (46.8%) 7.3Mb |
| >Q10 |
4355 (20.5%) 3.2Mb |
| >Q12 |
1539 (7.2%) 0.2Mb |
| >Q15 |
347 (1.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.6 (28) |
| 2 |
21.7 (24) |
| 3 |
21.1 (16) |
| 4 |
20.9 (16) |
| 5 |
20.5 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
138993 (6.5) |
| 2 |
90637 (5.2) |
| 3 |
70105 (3.7) |
| 4 |
58030 (6.5) |
| 5 |
47809 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot