NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
731.9 |
| Mean read quality |
10.0 |
| Median read length |
408.0 |
| Median read quality |
11.3 |
| Number of reads |
3,050.0 |
| Read length N50 |
1,486.0 |
| STDEV read length |
749.4 |
| Total bases |
2,232,250.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3034 (99.5%) 2.2Mb |
| >Q7 |
2971 (97.4%) 2.2Mb |
| >Q10 |
1990 (65.2%) 1.7Mb |
| >Q12 |
1232 (40.4%) 0.9Mb |
| >Q15 |
362 (11.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.3 (16) |
| 2 |
33.7 (16) |
| 3 |
33.4 (16) |
| 4 |
32.7 (16) |
| 5 |
32.7 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5046 (10.9) |
| 2 |
4269 (10.8) |
| 3 |
4151 (11.1) |
| 4 |
4036 (13.0) |
| 5 |
3847 (8.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
734.0 |
| Mean read quality |
10.0 |
| Median read length |
412.0 |
| Median read quality |
11.2 |
| Number of reads |
3,041.0 |
| Read length N50 |
1,486.0 |
| STDEV read length |
749.5 |
| Total bases |
2,232,104.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3025 (99.5%) 2.2Mb |
| >Q7 |
2962 (97.4%) 2.2Mb |
| >Q10 |
1981 (65.1%) 1.7Mb |
| >Q12 |
1223 (40.2%) 0.9Mb |
| >Q15 |
353 (11.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.0 (17) |
| 2 |
29.9 (16) |
| 3 |
29.0 (16) |
| 4 |
28.8 (16) |
| 5 |
28.7 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5046 (10.9) |
| 2 |
4269 (10.8) |
| 3 |
4151 (11.1) |
| 4 |
4036 (13.0) |
| 5 |
3847 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot