NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
600.2 |
| Mean read quality |
5.4 |
| Median read length |
178.0 |
| Median read quality |
6.1 |
| Number of reads |
10,389.0 |
| Read length N50 |
4,475.0 |
| STDEV read length |
2,033.4 |
| Total bases |
6,235,382.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7639 (73.5%) 5.4Mb |
| >Q7 |
3481 (33.5%) 3.8Mb |
| >Q10 |
550 (5.3%) 0.3Mb |
| >Q12 |
154 (1.5%) 0.0Mb |
| >Q15 |
22 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (16) |
| 2 |
18.0 (44) |
| 3 |
17.0 (16) |
| 4 |
16.5 (16) |
| 5 |
16.4 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44236 (6.7) |
| 2 |
38877 (9.4) |
| 3 |
38016 (8.8) |
| 4 |
31436 (8.7) |
| 5 |
29104 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot