NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,811.6 |
| Mean read quality |
10.8 |
| Median read length |
1,725.0 |
| Median read quality |
12.0 |
| Number of reads |
19,038.0 |
| Read length N50 |
2,249.0 |
| STDEV read length |
1,102.0 |
| Total bases |
34,490,136.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19022 (99.9%) 34.5Mb |
| >Q7 |
18912 (99.3%) 34.5Mb |
| >Q10 |
15307 (80.4%) 28.3Mb |
| >Q12 |
9454 (49.7%) 17.1Mb |
| >Q15 |
667 (3.5%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.9 (16) |
| 2 |
33.1 (20) |
| 3 |
32.9 (18) |
| 4 |
32.6 (16) |
| 5 |
32.2 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8912 (11.1) |
| 2 |
8691 (12.7) |
| 3 |
8472 (8.9) |
| 4 |
8461 (12.0) |
| 5 |
7995 (12.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,812.0 |
| Mean read quality |
10.8 |
| Median read length |
1,725.0 |
| Median read quality |
12.0 |
| Number of reads |
19,034.0 |
| Read length N50 |
2,249.0 |
| STDEV read length |
1,101.8 |
| Total bases |
34,490,070.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19018 (99.9%) 34.5Mb |
| >Q7 |
18908 (99.3%) 34.5Mb |
| >Q10 |
15303 (80.4%) 28.3Mb |
| >Q12 |
9450 (49.6%) 17.1Mb |
| >Q15 |
663 (3.5%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.1 (20) |
| 2 |
29.9 (16) |
| 3 |
29.7 (16) |
| 4 |
29.6 (16) |
| 5 |
29.5 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8912 (11.1) |
| 2 |
8691 (12.7) |
| 3 |
8472 (8.9) |
| 4 |
8461 (12.0) |
| 5 |
7995 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot