NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
720.8 |
| Mean read quality |
9.7 |
| Median read length |
404.0 |
| Median read quality |
10.8 |
| Number of reads |
4,246.0 |
| Read length N50 |
1,408.0 |
| STDEV read length |
760.6 |
| Total bases |
3,060,360.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4220 (99.4%) 3.1Mb |
| >Q7 |
4131 (97.3%) 3.0Mb |
| >Q10 |
2554 (60.2%) 2.1Mb |
| >Q12 |
1482 (34.9%) 1.1Mb |
| >Q15 |
406 (9.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.5 (16) |
| 2 |
32.7 (16) |
| 3 |
32.6 (16) |
| 4 |
31.9 (31) |
| 5 |
31.0 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8107 (8.9) |
| 2 |
6492 (9.6) |
| 3 |
4946 (12.5) |
| 4 |
4759 (11.5) |
| 5 |
4704 (13.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
721.8 |
| Mean read quality |
9.7 |
| Median read length |
404.5 |
| Median read quality |
10.8 |
| Number of reads |
4,240.0 |
| Read length N50 |
1,408.0 |
| STDEV read length |
760.7 |
| Total bases |
3,060,264.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4214 (99.4%) 3.1Mb |
| >Q7 |
4125 (97.3%) 3.0Mb |
| >Q10 |
2548 (60.1%) 2.1Mb |
| >Q12 |
1476 (34.8%) 1.1Mb |
| >Q15 |
400 (9.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.9 (31) |
| 2 |
29.7 (16) |
| 3 |
29.5 (16) |
| 4 |
29.2 (19) |
| 5 |
29.2 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8107 (8.9) |
| 2 |
6492 (9.6) |
| 3 |
4946 (12.5) |
| 4 |
4759 (11.5) |
| 5 |
4704 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot