NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
754.8 |
| Mean read quality |
10.8 |
| Median read length |
421.0 |
| Median read quality |
12.2 |
| Number of reads |
30,474.0 |
| Read length N50 |
1,690.0 |
| STDEV read length |
882.3 |
| Total bases |
23,003,180.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
30178 (99.0%) 23.0Mb |
| >Q7 |
29428 (96.6%) 22.9Mb |
| >Q10 |
23731 (77.9%) 18.3Mb |
| >Q12 |
16020 (52.6%) 10.8Mb |
| >Q15 |
5392 (17.7%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.9 (17) |
| 2 |
34.9 (16) |
| 3 |
34.8 (16) |
| 4 |
34.6 (16) |
| 5 |
34.6 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7728 (12.5) |
| 2 |
7186 (11.3) |
| 3 |
6587 (13.0) |
| 4 |
6397 (10.4) |
| 5 |
6225 (11.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
758.2 |
| Mean read quality |
10.8 |
| Median read length |
429.0 |
| Median read quality |
12.2 |
| Number of reads |
30,336.0 |
| Read length N50 |
1,691.0 |
| STDEV read length |
882.9 |
| Total bases |
23,000,918.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
30040 (99.0%) 23.0Mb |
| >Q7 |
29290 (96.6%) 22.9Mb |
| >Q10 |
23593 (77.8%) 18.3Mb |
| >Q12 |
15882 (52.4%) 10.8Mb |
| >Q15 |
5254 (17.3%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.3 (22) |
| 2 |
33.1 (22) |
| 3 |
32.0 (21) |
| 4 |
31.7 (20) |
| 5 |
30.5 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7728 (12.5) |
| 2 |
7186 (11.3) |
| 3 |
6587 (13.0) |
| 4 |
6397 (10.4) |
| 5 |
6225 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot