NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,749.0 |
| Mean read quality |
6.6 |
| Median read length |
866.0 |
| Median read quality |
8.0 |
| Number of reads |
41,404.0 |
| Read length N50 |
7,778.0 |
| STDEV read length |
4,497.7 |
| Total bases |
113,819,572.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36033 (87.0%) 110.4Mb |
| >Q7 |
26274 (63.5%) 96.1Mb |
| >Q10 |
3395 (8.2%) 9.2Mb |
| >Q12 |
295 (0.7%) 0.0Mb |
| >Q15 |
62 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (27) |
| 2 |
18.2 (16) |
| 3 |
18.1 (36) |
| 4 |
18.0 (16) |
| 5 |
17.9 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54045 (8.6) |
| 2 |
51216 (9.0) |
| 3 |
50381 (10.2) |
| 4 |
49234 (10.0) |
| 5 |
47309 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot