NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,564.7 |
| Mean read quality |
6.3 |
| Median read length |
262.0 |
| Median read quality |
7.1 |
| Number of reads |
11,973.0 |
| Read length N50 |
7,787.0 |
| STDEV read length |
3,820.5 |
| Total bases |
18,733,588.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9988 (83.4%) 17.6Mb |
| >Q7 |
6145 (51.3%) 14.7Mb |
| >Q10 |
2601 (21.7%) 9.6Mb |
| >Q12 |
360 (3.0%) 0.1Mb |
| >Q15 |
58 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (16) |
| 2 |
19.4 (16) |
| 3 |
19.0 (31) |
| 4 |
18.8 (16) |
| 5 |
18.8 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52843 (4.5) |
| 2 |
47418 (10.4) |
| 3 |
44861 (10.0) |
| 4 |
44409 (4.9) |
| 5 |
43941 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot