NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,213.0 |
| Mean read quality |
10.2 |
| Median read length |
954.0 |
| Median read quality |
11.5 |
| Number of reads |
4,643.0 |
| Read length N50 |
2,302.0 |
| STDEV read length |
1,174.8 |
| Total bases |
5,632,157.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4605 (99.2%) 5.6Mb |
| >Q7 |
4495 (96.8%) 5.6Mb |
| >Q10 |
3235 (69.7%) 4.3Mb |
| >Q12 |
1968 (42.4%) 2.3Mb |
| >Q15 |
601 (12.9%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
36.3 (16) |
| 2 |
34.8 (18) |
| 3 |
32.7 (16) |
| 4 |
32.0 (16) |
| 5 |
31.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7236 (8.4) |
| 2 |
6998 (11.6) |
| 3 |
6415 (12.2) |
| 4 |
6290 (11.8) |
| 5 |
5826 (12.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,216.9 |
| Mean read quality |
10.2 |
| Median read length |
963.5 |
| Median read quality |
11.5 |
| Number of reads |
4,628.0 |
| Read length N50 |
2,302.0 |
| STDEV read length |
1,174.7 |
| Total bases |
5,631,912.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4590 (99.2%) 5.6Mb |
| >Q7 |
4480 (96.8%) 5.6Mb |
| >Q10 |
3220 (69.6%) 4.3Mb |
| >Q12 |
1953 (42.2%) 2.3Mb |
| >Q15 |
586 (12.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.0 (18) |
| 2 |
29.9 (16) |
| 3 |
29.8 (16) |
| 4 |
29.8 (16) |
| 5 |
29.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7236 (8.4) |
| 2 |
6998 (11.6) |
| 3 |
6415 (12.2) |
| 4 |
6290 (11.8) |
| 5 |
5826 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot