NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,220.2 |
| Mean read quality |
8.6 |
| Median read length |
2,213.0 |
| Median read quality |
9.4 |
| Number of reads |
83,704.0 |
| Read length N50 |
4,690.0 |
| STDEV read length |
2,824.5 |
| Total bases |
269,546,518.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
83673 (100.0%) 269.5Mb |
| >Q7 |
78440 (93.7%) 254.6Mb |
| >Q10 |
29084 (34.7%) 94.9Mb |
| >Q12 |
463 (0.6%) 1.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (326) |
| 2 |
13.4 (982) |
| 3 |
13.4 (724) |
| 4 |
13.4 (942) |
| 5 |
13.3 (565) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37952 (6.7) |
| 2 |
31956 (10.3) |
| 3 |
30823 (9.5) |
| 4 |
25919 (11.1) |
| 5 |
25901 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot