NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,542.2 |
| Mean read quality |
8.6 |
| Median read length |
2,769.0 |
| Median read quality |
9.4 |
| Number of reads |
88,431.0 |
| Read length N50 |
4,777.0 |
| STDEV read length |
2,730.3 |
| Total bases |
313,244,601.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
88362 (99.9%) 313.1Mb |
| >Q7 |
82752 (93.6%) 294.7Mb |
| >Q10 |
31314 (35.4%) 111.8Mb |
| >Q12 |
569 (0.6%) 1.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (717) |
| 2 |
13.2 (700) |
| 3 |
13.1 (620) |
| 4 |
13.1 (725) |
| 5 |
13.0 (384) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33167 (8.2) |
| 2 |
29122 (7.2) |
| 3 |
27892 (8.5) |
| 4 |
27643 (7.6) |
| 5 |
26859 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot