NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,342.0 |
| Mean read quality |
8.7 |
| Median read length |
1,746.0 |
| Median read quality |
9.5 |
| Number of reads |
99,438.0 |
| Read length N50 |
3,014.0 |
| STDEV read length |
1,961.3 |
| Total bases |
232,885,524.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
99388 (99.9%) 232.8Mb |
| >Q7 |
93758 (94.3%) 220.4Mb |
| >Q10 |
36804 (37.0%) 85.4Mb |
| >Q12 |
614 (0.6%) 1.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (883) |
| 2 |
13.3 (1009) |
| 3 |
13.3 (366) |
| 4 |
13.2 (674) |
| 5 |
13.1 (382) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27247 (7.9) |
| 2 |
24932 (10.1) |
| 3 |
24232 (8.3) |
| 4 |
21899 (7.7) |
| 5 |
21313 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot