NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,396.8 |
| Mean read quality |
8.6 |
| Median read length |
2,143.0 |
| Median read quality |
9.5 |
| Number of reads |
123,971.0 |
| Read length N50 |
2,942.0 |
| STDEV read length |
1,376.6 |
| Total bases |
297,138,501.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
123944 (100.0%) 297.1Mb |
| >Q7 |
117364 (94.7%) 282.0Mb |
| >Q10 |
44314 (35.7%) 104.3Mb |
| >Q12 |
799 (0.6%) 1.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (1298) |
| 2 |
13.2 (601) |
| 3 |
13.1 (617) |
| 4 |
13.0 (3346) |
| 5 |
13.0 (2053) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21405 (10.6) |
| 2 |
14317 (9.8) |
| 3 |
13936 (9.5) |
| 4 |
13146 (8.5) |
| 5 |
12605 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot