NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,816.3 |
| Mean read quality |
8.7 |
| Median read length |
2,202.0 |
| Median read quality |
9.6 |
| Number of reads |
319,202.0 |
| Read length N50 |
3,654.0 |
| STDEV read length |
2,148.5 |
| Total bases |
898,958,558.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
319106 (100.0%) 898.8Mb |
| >Q7 |
303518 (95.1%) 857.5Mb |
| >Q10 |
121210 (38.0%) 344.8Mb |
| >Q12 |
2016 (0.6%) 3.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (666) |
| 2 |
13.3 (1258) |
| 3 |
13.3 (590) |
| 4 |
13.3 (892) |
| 5 |
13.2 (332) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33671 (9.3) |
| 2 |
28592 (8.5) |
| 3 |
26557 (8.8) |
| 4 |
26386 (9.4) |
| 5 |
26353 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot