NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,335.5 |
| Mean read quality |
8.7 |
| Median read length |
3,451.0 |
| Median read quality |
9.6 |
| Number of reads |
78,863.0 |
| Read length N50 |
6,138.0 |
| STDEV read length |
3,165.2 |
| Total bases |
341,909,821.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78839 (100.0%) 341.8Mb |
| >Q7 |
74851 (94.9%) 326.3Mb |
| >Q10 |
30010 (38.1%) 131.4Mb |
| >Q12 |
480 (0.6%) 1.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (2710) |
| 2 |
13.3 (1857) |
| 3 |
13.2 (504) |
| 4 |
13.2 (422) |
| 5 |
13.1 (1893) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31076 (9.9) |
| 2 |
31051 (8.7) |
| 3 |
28608 (9.0) |
| 4 |
28214 (10.7) |
| 5 |
27955 (7.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot