NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,891.7 |
| Mean read quality |
8.6 |
| Median read length |
3,146.0 |
| Median read quality |
9.5 |
| Number of reads |
136,111.0 |
| Read length N50 |
5,281.0 |
| STDEV read length |
2,710.4 |
| Total bases |
529,702,005.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
136017 (99.9%) 529.4Mb |
| >Q7 |
127920 (94.0%) 500.0Mb |
| >Q10 |
51432 (37.8%) 200.6Mb |
| >Q12 |
1118 (0.8%) 3.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (353) |
| 2 |
13.5 (398) |
| 3 |
13.5 (369) |
| 4 |
13.4 (516) |
| 5 |
13.4 (445) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29406 (7.9) |
| 2 |
28190 (9.0) |
| 3 |
28185 (10.4) |
| 4 |
26740 (10.1) |
| 5 |
26678 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot