NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,773.2 |
| Mean read quality |
8.7 |
| Median read length |
4,073.0 |
| Median read quality |
9.6 |
| Number of reads |
95,023.0 |
| Read length N50 |
6,464.0 |
| STDEV read length |
3,160.4 |
| Total bases |
453,564,959.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
94978 (100.0%) 453.4Mb |
| >Q7 |
90212 (94.9%) 433.3Mb |
| >Q10 |
36779 (38.7%) 179.5Mb |
| >Q12 |
599 (0.6%) 2.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (1288) |
| 2 |
13.3 (2062) |
| 3 |
13.2 (2494) |
| 4 |
13.2 (710) |
| 5 |
13.1 (496) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29080 (9.6) |
| 2 |
28506 (7.7) |
| 3 |
27138 (8.8) |
| 4 |
26205 (8.9) |
| 5 |
25991 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot