NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,512.6 |
| Mean read quality |
8.7 |
| Median read length |
2,479.0 |
| Median read quality |
9.6 |
| Number of reads |
168,714.0 |
| Read length N50 |
5,269.0 |
| STDEV read length |
2,970.2 |
| Total bases |
592,631,868.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
168685 (100.0%) 592.6Mb |
| >Q7 |
161031 (95.4%) 568.7Mb |
| >Q10 |
64263 (38.1%) 228.3Mb |
| >Q12 |
1682 (1.0%) 4.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (562) |
| 2 |
13.6 (418) |
| 3 |
13.3 (5151) |
| 4 |
13.3 (2317) |
| 5 |
13.3 (951) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33554 (8.7) |
| 2 |
33226 (8.1) |
| 3 |
32612 (10.8) |
| 4 |
32468 (8.0) |
| 5 |
31667 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot