NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,163.1 |
| Mean read quality |
8.6 |
| Median read length |
2,310.0 |
| Median read quality |
9.5 |
| Number of reads |
180,612.0 |
| Read length N50 |
4,459.0 |
| STDEV read length |
2,487.5 |
| Total bases |
571,288,899.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
180548 (100.0%) 571.2Mb |
| >Q7 |
171380 (94.9%) 544.2Mb |
| >Q10 |
63949 (35.4%) 202.9Mb |
| >Q12 |
841 (0.5%) 2.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.9 (383) |
| 2 |
13.4 (1197) |
| 3 |
13.3 (4097) |
| 4 |
13.2 (983) |
| 5 |
13.2 (545) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43157 (10.1) |
| 2 |
32505 (10.3) |
| 3 |
30539 (8.8) |
| 4 |
28676 (8.6) |
| 5 |
27547 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot