NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,311.5 |
| Mean read quality |
8.5 |
| Median read length |
1,842.0 |
| Median read quality |
9.3 |
| Number of reads |
176,522.0 |
| Read length N50 |
2,865.0 |
| STDEV read length |
1,627.6 |
| Total bases |
408,028,556.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
176408 (99.9%) 407.8Mb |
| >Q7 |
166766 (94.5%) 387.2Mb |
| >Q10 |
54356 (30.8%) 127.3Mb |
| >Q12 |
632 (0.4%) 1.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (1335) |
| 2 |
13.5 (5168) |
| 3 |
13.4 (776) |
| 4 |
13.2 (1029) |
| 5 |
13.2 (1237) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20412 (6.6) |
| 2 |
18502 (10.2) |
| 3 |
17885 (8.5) |
| 4 |
17678 (10.5) |
| 5 |
17551 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot