NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,442.7 |
| Mean read quality |
8.8 |
| Median read length |
2,077.0 |
| Median read quality |
9.6 |
| Number of reads |
191,145.0 |
| Read length N50 |
3,101.0 |
| STDEV read length |
1,562.3 |
| Total bases |
466,904,451.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
191092 (100.0%) 466.8Mb |
| >Q7 |
184413 (96.5%) 451.4Mb |
| >Q10 |
72350 (37.9%) 175.4Mb |
| >Q12 |
1170 (0.6%) 2.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (434) |
| 2 |
13.4 (822) |
| 3 |
13.4 (1239) |
| 4 |
13.3 (1338) |
| 5 |
13.3 (514) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21485 (8.1) |
| 2 |
18329 (11.3) |
| 3 |
17967 (10.7) |
| 4 |
17297 (8.7) |
| 5 |
17084 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot