NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,857.4 |
| Mean read quality |
8.7 |
| Median read length |
2,297.0 |
| Median read quality |
9.5 |
| Number of reads |
104,792.0 |
| Read length N50 |
3,818.0 |
| STDEV read length |
2,082.4 |
| Total bases |
299,430,344.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
104749 (100.0%) 299.4Mb |
| >Q7 |
100007 (95.4%) 286.9Mb |
| >Q10 |
36763 (35.1%) 105.0Mb |
| >Q12 |
535 (0.5%) 1.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (942) |
| 2 |
13.3 (522) |
| 3 |
13.1 (650) |
| 4 |
13.1 (715) |
| 5 |
13.0 (845) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22483 (9.4) |
| 2 |
19537 (9.4) |
| 3 |
19327 (7.5) |
| 4 |
18629 (9.9) |
| 5 |
18273 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot