NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,272.1 |
| Mean read quality |
8.7 |
| Median read length |
1,926.0 |
| Median read quality |
9.4 |
| Number of reads |
229,141.0 |
| Read length N50 |
2,869.0 |
| STDEV read length |
1,433.0 |
| Total bases |
520,628,781.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
229094 (100.0%) 520.6Mb |
| >Q7 |
219435 (95.8%) 500.3Mb |
| >Q10 |
77557 (33.8%) 176.5Mb |
| >Q12 |
1176 (0.5%) 2.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (2248) |
| 2 |
13.3 (1270) |
| 3 |
13.3 (998) |
| 4 |
13.2 (312) |
| 5 |
13.2 (1689) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23168 (9.1) |
| 2 |
21597 (8.6) |
| 3 |
16873 (10.2) |
| 4 |
15968 (9.8) |
| 5 |
14734 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot