NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,483.2 |
| Mean read quality |
8.7 |
| Median read length |
1,832.0 |
| Median read quality |
9.5 |
| Number of reads |
201,678.0 |
| Read length N50 |
3,453.0 |
| STDEV read length |
1,973.3 |
| Total bases |
500,797,860.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
201610 (100.0%) 500.7Mb |
| >Q7 |
193037 (95.7%) 480.1Mb |
| >Q10 |
73321 (36.4%) 181.6Mb |
| >Q12 |
1218 (0.6%) 2.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (511) |
| 2 |
13.5 (1390) |
| 3 |
13.4 (1228) |
| 4 |
13.3 (2314) |
| 5 |
13.2 (282) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31084 (8.2) |
| 2 |
27588 (9.6) |
| 3 |
24755 (10.0) |
| 4 |
24478 (9.9) |
| 5 |
23637 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot