NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,592.8 |
| Mean read quality |
8.7 |
| Median read length |
2,127.0 |
| Median read quality |
9.5 |
| Number of reads |
267,185.0 |
| Read length N50 |
3,238.0 |
| STDEV read length |
1,722.2 |
| Total bases |
692,769,657.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
267080 (100.0%) 692.6Mb |
| >Q7 |
255220 (95.5%) 663.4Mb |
| >Q10 |
95534 (35.8%) 247.4Mb |
| >Q12 |
1324 (0.5%) 2.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (1178) |
| 2 |
13.5 (1939) |
| 3 |
13.2 (1428) |
| 4 |
13.2 (461) |
| 5 |
13.1 (4193) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26876 (9.8) |
| 2 |
21291 (7.6) |
| 3 |
21047 (6.8) |
| 4 |
20391 (9.2) |
| 5 |
19401 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot