NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,238.0 |
| Mean read quality |
8.6 |
| Median read length |
1,758.0 |
| Median read quality |
9.4 |
| Number of reads |
272,045.0 |
| Read length N50 |
2,796.0 |
| STDEV read length |
1,612.9 |
| Total bases |
608,841,680.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
271947 (100.0%) 608.7Mb |
| >Q7 |
259615 (95.4%) 582.6Mb |
| >Q10 |
92755 (34.1%) 209.4Mb |
| >Q12 |
1100 (0.4%) 1.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (442) |
| 2 |
13.6 (1028) |
| 3 |
13.6 (1115) |
| 4 |
13.6 (659) |
| 5 |
13.5 (464) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20660 (10.1) |
| 2 |
20620 (8.8) |
| 3 |
19878 (8.7) |
| 4 |
19618 (8.6) |
| 5 |
19114 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot