NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,160.4 |
| Mean read quality |
8.7 |
| Median read length |
2,230.0 |
| Median read quality |
9.5 |
| Number of reads |
188,301.0 |
| Read length N50 |
4,627.0 |
| STDEV read length |
2,579.9 |
| Total bases |
595,111,824.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
188232 (100.0%) 595.0Mb |
| >Q7 |
179972 (95.6%) 571.1Mb |
| >Q10 |
64513 (34.3%) 208.2Mb |
| >Q12 |
774 (0.4%) 1.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (405) |
| 2 |
13.5 (1532) |
| 3 |
13.4 (291) |
| 4 |
13.4 (542) |
| 5 |
13.2 (1355) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28726 (10.3) |
| 2 |
27578 (7.9) |
| 3 |
25510 (10.6) |
| 4 |
24697 (9.9) |
| 5 |
24433 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot