NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,555.6 |
| Mean read quality |
8.6 |
| Median read length |
2,793.0 |
| Median read quality |
9.4 |
| Number of reads |
128,396.0 |
| Read length N50 |
4,827.0 |
| STDEV read length |
2,634.0 |
| Total bases |
456,527,304.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
128357 (100.0%) 456.5Mb |
| >Q7 |
123001 (95.8%) 438.7Mb |
| >Q10 |
41986 (32.7%) 152.5Mb |
| >Q12 |
376 (0.3%) 0.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (371) |
| 2 |
13.2 (641) |
| 3 |
13.1 (469) |
| 4 |
13.1 (704) |
| 5 |
13.0 (724) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37604 (10.9) |
| 2 |
31718 (8.5) |
| 3 |
31360 (10.7) |
| 4 |
29101 (8.4) |
| 5 |
28240 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot