NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,773.9 |
| Mean read quality |
8.5 |
| Median read length |
1,492.0 |
| Median read quality |
9.3 |
| Number of reads |
165,629.0 |
| Read length N50 |
2,205.0 |
| STDEV read length |
1,109.3 |
| Total bases |
293,813,493.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
165453 (99.9%) 293.6Mb |
| >Q7 |
153226 (92.5%) 273.1Mb |
| >Q10 |
53486 (32.3%) 94.9Mb |
| >Q12 |
822 (0.5%) 1.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (3333) |
| 2 |
13.2 (1294) |
| 3 |
13.1 (1016) |
| 4 |
13.1 (628) |
| 5 |
13.1 (1600) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15662 (11.4) |
| 2 |
13066 (6.4) |
| 3 |
12811 (8.2) |
| 4 |
12738 (8.5) |
| 5 |
12725 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot