NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,628.3 |
| Mean read quality |
8.7 |
| Median read length |
1,443.5 |
| Median read quality |
9.6 |
| Number of reads |
172,790.0 |
| Read length N50 |
1,937.0 |
| STDEV read length |
905.7 |
| Total bases |
281,346,800.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
172723 (100.0%) 281.3Mb |
| >Q7 |
164245 (95.1%) 268.2Mb |
| >Q10 |
65498 (37.9%) 106.4Mb |
| >Q12 |
977 (0.6%) 1.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (1211) |
| 2 |
13.1 (356) |
| 3 |
13.1 (742) |
| 4 |
13.0 (470) |
| 5 |
13.0 (1620) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12442 (8.7) |
| 2 |
11509 (8.3) |
| 3 |
10185 (9.4) |
| 4 |
9741 (8.0) |
| 5 |
9639 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot