NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,421.8 |
| Mean read quality |
8.7 |
| Median read length |
1,960.0 |
| Median read quality |
9.5 |
| Number of reads |
74,917.0 |
| Read length N50 |
3,221.0 |
| STDEV read length |
1,710.4 |
| Total bases |
181,431,946.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
74894 (100.0%) 181.4Mb |
| >Q7 |
71051 (94.8%) 172.5Mb |
| >Q10 |
26863 (35.9%) 66.0Mb |
| >Q12 |
330 (0.4%) 0.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (3964) |
| 2 |
13.0 (979) |
| 3 |
12.9 (1840) |
| 4 |
12.9 (2125) |
| 5 |
12.9 (2120) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19273 (10.0) |
| 2 |
18887 (9.2) |
| 3 |
18757 (7.2) |
| 4 |
16001 (9.1) |
| 5 |
15871 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot