NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,682.2 |
| Mean read quality |
8.5 |
| Median read length |
1,451.0 |
| Median read quality |
9.3 |
| Number of reads |
137,265.0 |
| Read length N50 |
2,112.0 |
| STDEV read length |
1,015.0 |
| Total bases |
230,914,029.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
137182 (99.9%) 230.8Mb |
| >Q7 |
129276 (94.2%) 218.4Mb |
| >Q10 |
40536 (29.5%) 67.9Mb |
| >Q12 |
526 (0.4%) 0.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (781) |
| 2 |
13.4 (540) |
| 3 |
13.1 (1388) |
| 4 |
13.1 (635) |
| 5 |
13.1 (648) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15595 (9.6) |
| 2 |
14888 (10.7) |
| 3 |
14470 (10.0) |
| 4 |
13247 (10.5) |
| 5 |
12830 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot