NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,470.2 |
| Mean read quality |
8.7 |
| Median read length |
2,133.0 |
| Median read quality |
9.5 |
| Number of reads |
92,884.0 |
| Read length N50 |
3,079.0 |
| STDEV read length |
1,528.5 |
| Total bases |
229,446,317.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
92838 (100.0%) 229.4Mb |
| >Q7 |
88402 (95.2%) 218.9Mb |
| >Q10 |
33298 (35.8%) 83.0Mb |
| >Q12 |
557 (0.6%) 1.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (1022) |
| 2 |
13.0 (1440) |
| 3 |
12.9 (468) |
| 4 |
12.9 (2770) |
| 5 |
12.9 (1783) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20256 (8.1) |
| 2 |
17534 (10.7) |
| 3 |
16990 (8.6) |
| 4 |
16946 (8.1) |
| 5 |
16241 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot