NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,557.0 |
| Mean read quality |
8.6 |
| Median read length |
2,182.0 |
| Median read quality |
9.5 |
| Number of reads |
200,536.0 |
| Read length N50 |
3,175.0 |
| STDEV read length |
1,618.3 |
| Total bases |
512,768,272.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
200432 (99.9%) 512.6Mb |
| >Q7 |
189351 (94.4%) 487.1Mb |
| >Q10 |
73287 (36.5%) 189.0Mb |
| >Q12 |
1204 (0.6%) 2.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (757) |
| 2 |
13.2 (350) |
| 3 |
13.1 (902) |
| 4 |
13.1 (1672) |
| 5 |
13.1 (855) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24128 (10.4) |
| 2 |
21457 (9.7) |
| 3 |
18393 (8.1) |
| 4 |
18310 (8.7) |
| 5 |
16346 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot