NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,847.2 |
| Mean read quality |
8.8 |
| Median read length |
1,545.0 |
| Median read quality |
9.6 |
| Number of reads |
195,743.0 |
| Read length N50 |
2,211.0 |
| STDEV read length |
1,258.8 |
| Total bases |
361,585,096.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
195699 (100.0%) 361.5Mb |
| >Q7 |
188722 (96.4%) 349.1Mb |
| >Q10 |
75841 (38.7%) 138.5Mb |
| >Q12 |
1784 (0.9%) 3.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (2119) |
| 2 |
13.3 (1044) |
| 3 |
13.3 (1602) |
| 4 |
13.3 (1711) |
| 5 |
13.3 (1385) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25314 (8.6) |
| 2 |
22376 (8.4) |
| 3 |
22027 (8.9) |
| 4 |
21619 (11.4) |
| 5 |
19106 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot