NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,916.3 |
| Mean read quality |
8.8 |
| Median read length |
2,311.0 |
| Median read quality |
9.7 |
| Number of reads |
96,632.0 |
| Read length N50 |
3,849.0 |
| STDEV read length |
2,113.8 |
| Total bases |
281,806,083.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
96605 (100.0%) 281.8Mb |
| >Q7 |
92791 (96.0%) 271.2Mb |
| >Q10 |
39339 (40.7%) 114.6Mb |
| >Q12 |
762 (0.8%) 1.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (1424) |
| 2 |
13.3 (809) |
| 3 |
13.3 (889) |
| 4 |
13.2 (1118) |
| 5 |
13.2 (842) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24277 (9.0) |
| 2 |
20731 (10.5) |
| 3 |
19160 (9.6) |
| 4 |
19096 (10.0) |
| 5 |
18680 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot