NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,285.1 |
| Mean read quality |
8.8 |
| Median read length |
2,025.0 |
| Median read quality |
9.6 |
| Number of reads |
164,752.0 |
| Read length N50 |
2,774.0 |
| STDEV read length |
1,305.6 |
| Total bases |
376,470,413.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
164707 (100.0%) 376.4Mb |
| >Q7 |
158215 (96.0%) 362.2Mb |
| >Q10 |
63440 (38.5%) 142.1Mb |
| >Q12 |
1485 (0.9%) 3.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (2063) |
| 2 |
13.2 (2956) |
| 3 |
13.2 (2792) |
| 4 |
13.1 (550) |
| 5 |
13.1 (3801) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19229 (9.8) |
| 2 |
17975 (7.2) |
| 3 |
16078 (9.0) |
| 4 |
15526 (7.9) |
| 5 |
13261 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot