NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,784.4 |
| Mean read quality |
8.7 |
| Median read length |
1,956.0 |
| Median read quality |
9.5 |
| Number of reads |
131,406.0 |
| Read length N50 |
4,086.0 |
| STDEV read length |
2,368.3 |
| Total bases |
365,881,101.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
131365 (100.0%) 365.8Mb |
| >Q7 |
125817 (95.7%) 351.8Mb |
| >Q10 |
48099 (36.6%) 136.9Mb |
| >Q12 |
815 (0.6%) 2.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (2639) |
| 2 |
13.4 (1684) |
| 3 |
13.4 (1209) |
| 4 |
13.3 (1908) |
| 5 |
13.2 (2548) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22912 (8.9) |
| 2 |
21831 (9.3) |
| 3 |
21573 (6.1) |
| 4 |
20939 (10.9) |
| 5 |
20838 (7.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot