NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,032.2 |
| Mean read quality |
8.7 |
| Median read length |
1,826.0 |
| Median read quality |
9.5 |
| Number of reads |
171,365.0 |
| Read length N50 |
2,492.0 |
| STDEV read length |
1,164.8 |
| Total bases |
348,254,312.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
171317 (100.0%) 348.2Mb |
| >Q7 |
163856 (95.6%) 333.8Mb |
| >Q10 |
60634 (35.4%) 121.9Mb |
| >Q12 |
944 (0.6%) 1.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (1658) |
| 2 |
13.2 (592) |
| 3 |
13.2 (885) |
| 4 |
13.2 (774) |
| 5 |
13.2 (3909) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14959 (11.6) |
| 2 |
14624 (9.5) |
| 3 |
14551 (8.0) |
| 4 |
13377 (10.8) |
| 5 |
12894 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot