NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,106.8 |
| Mean read quality |
8.7 |
| Median read length |
2,760.0 |
| Median read quality |
9.5 |
| Number of reads |
85,096.0 |
| Read length N50 |
3,893.0 |
| STDEV read length |
1,875.9 |
| Total bases |
264,376,673.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
85066 (100.0%) 264.3Mb |
| >Q7 |
81379 (95.6%) 253.5Mb |
| >Q10 |
29565 (34.7%) 91.7Mb |
| >Q12 |
300 (0.4%) 0.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.8 (1359) |
| 2 |
13.1 (2294) |
| 3 |
13.0 (2013) |
| 4 |
13.0 (3037) |
| 5 |
12.9 (348) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20848 (8.9) |
| 2 |
20803 (9.9) |
| 3 |
19413 (7.0) |
| 4 |
18576 (10.3) |
| 5 |
17633 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot