NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,838.6 |
| Mean read quality |
8.8 |
| Median read length |
4,256.0 |
| Median read quality |
9.7 |
| Number of reads |
62,266.0 |
| Read length N50 |
6,408.0 |
| STDEV read length |
3,051.6 |
| Total bases |
301,280,211.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
62232 (99.9%) 301.2Mb |
| >Q7 |
58592 (94.1%) 284.7Mb |
| >Q10 |
26497 (42.6%) 132.9Mb |
| >Q12 |
600 (1.0%) 2.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (1321) |
| 2 |
13.3 (2376) |
| 3 |
13.2 (1355) |
| 4 |
13.1 (1098) |
| 5 |
13.1 (9477) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27840 (10.6) |
| 2 |
26881 (9.5) |
| 3 |
24449 (9.1) |
| 4 |
24338 (9.7) |
| 5 |
23957 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot