NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,085.3 |
| Mean read quality |
8.8 |
| Median read length |
3,540.5 |
| Median read quality |
9.7 |
| Number of reads |
29,700.0 |
| Read length N50 |
5,335.0 |
| STDEV read length |
2,637.8 |
| Total bases |
121,331,957.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29690 (100.0%) 121.3Mb |
| >Q7 |
28228 (95.0%) 115.8Mb |
| >Q10 |
12182 (41.0%) 52.0Mb |
| >Q12 |
225 (0.8%) 0.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (1142) |
| 2 |
13.0 (8184) |
| 3 |
12.9 (3164) |
| 4 |
12.9 (983) |
| 5 |
12.9 (2793) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27971 (7.7) |
| 2 |
27747 (9.8) |
| 3 |
26367 (8.7) |
| 4 |
24837 (8.6) |
| 5 |
23987 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot