NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,894.7 |
| Mean read quality |
8.8 |
| Median read length |
3,389.0 |
| Median read quality |
9.7 |
| Number of reads |
60,369.0 |
| Read length N50 |
4,948.0 |
| STDEV read length |
2,409.5 |
| Total bases |
235,118,434.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
60360 (100.0%) 235.1Mb |
| >Q7 |
58015 (96.1%) 226.8Mb |
| >Q10 |
24781 (41.0%) 100.4Mb |
| >Q12 |
445 (0.7%) 1.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (1879) |
| 2 |
12.9 (1278) |
| 3 |
12.9 (602) |
| 4 |
12.9 (928) |
| 5 |
12.9 (4663) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24400 (11.8) |
| 2 |
23846 (9.9) |
| 3 |
23318 (9.3) |
| 4 |
21966 (9.4) |
| 5 |
21385 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot