NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,609.0 |
| Mean read quality |
8.9 |
| Median read length |
4,241.0 |
| Median read quality |
9.9 |
| Number of reads |
46,073.0 |
| Read length N50 |
6,002.0 |
| STDEV read length |
2,796.3 |
| Total bases |
212,352,177.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
46063 (100.0%) 212.3Mb |
| >Q7 |
44019 (95.5%) 203.7Mb |
| >Q10 |
21159 (45.9%) 101.1Mb |
| >Q12 |
381 (0.8%) 1.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (3354) |
| 2 |
13.2 (2588) |
| 3 |
13.0 (4350) |
| 4 |
13.0 (2015) |
| 5 |
13.0 (2313) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29863 (8.9) |
| 2 |
28948 (8.7) |
| 3 |
24657 (7.9) |
| 4 |
24114 (9.4) |
| 5 |
23419 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot