NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,888.0 |
| Mean read quality |
8.9 |
| Median read length |
4,382.0 |
| Median read quality |
9.8 |
| Number of reads |
76,817.0 |
| Read length N50 |
6,596.0 |
| STDEV read length |
3,152.2 |
| Total bases |
375,479,480.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
76810 (100.0%) 375.5Mb |
| >Q7 |
73617 (95.8%) 361.5Mb |
| >Q10 |
33991 (44.2%) 173.4Mb |
| >Q12 |
591 (0.8%) 2.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (1251) |
| 2 |
13.1 (8191) |
| 3 |
13.0 (2494) |
| 4 |
13.0 (2303) |
| 5 |
13.0 (1911) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33704 (9.3) |
| 2 |
31170 (9.8) |
| 3 |
30668 (9.8) |
| 4 |
30120 (9.0) |
| 5 |
27501 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot