NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,813.8 |
| Mean read quality |
8.9 |
| Median read length |
4,250.5 |
| Median read quality |
9.8 |
| Number of reads |
84,210.0 |
| Read length N50 |
6,733.0 |
| STDEV read length |
3,304.6 |
| Total bases |
405,369,448.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
84198 (100.0%) 405.3Mb |
| >Q7 |
80630 (95.7%) 389.6Mb |
| >Q10 |
38478 (45.7%) 192.1Mb |
| >Q12 |
698 (0.8%) 3.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (3953) |
| 2 |
13.1 (2487) |
| 3 |
13.1 (1125) |
| 4 |
13.0 (3564) |
| 5 |
13.0 (4387) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29272 (8.9) |
| 2 |
27511 (11.1) |
| 3 |
26406 (8.2) |
| 4 |
26127 (8.8) |
| 5 |
25934 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot