NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,992.0 |
| Mean read quality |
8.8 |
| Median read length |
3,545.0 |
| Median read quality |
9.7 |
| Number of reads |
83,971.0 |
| Read length N50 |
5,087.0 |
| STDEV read length |
2,403.4 |
| Total bases |
335,216,002.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
83954 (100.0%) 335.2Mb |
| >Q7 |
79931 (95.2%) 320.5Mb |
| >Q10 |
34431 (41.0%) 142.5Mb |
| >Q12 |
410 (0.5%) 1.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (1616) |
| 2 |
13.0 (1422) |
| 3 |
12.9 (612) |
| 4 |
12.9 (1166) |
| 5 |
12.9 (6265) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27574 (9.9) |
| 2 |
26401 (6.0) |
| 3 |
26294 (8.9) |
| 4 |
23364 (9.7) |
| 5 |
22556 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot