NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,879.4 |
| Mean read quality |
8.9 |
| Median read length |
3,462.0 |
| Median read quality |
9.8 |
| Number of reads |
78,301.0 |
| Read length N50 |
5,216.0 |
| STDEV read length |
2,498.6 |
| Total bases |
303,758,800.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78291 (100.0%) 303.7Mb |
| >Q7 |
74831 (95.6%) 291.6Mb |
| >Q10 |
34263 (43.8%) 137.5Mb |
| >Q12 |
585 (0.7%) 1.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (1897) |
| 2 |
13.1 (3411) |
| 3 |
13.0 (6342) |
| 4 |
12.9 (3854) |
| 5 |
12.9 (2002) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24218 (8.5) |
| 2 |
23736 (8.7) |
| 3 |
20605 (11.3) |
| 4 |
20517 (8.9) |
| 5 |
19700 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot