NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,686.8 |
| Mean read quality |
8.9 |
| Median read length |
4,312.0 |
| Median read quality |
9.8 |
| Number of reads |
101,888.0 |
| Read length N50 |
6,144.0 |
| STDEV read length |
2,843.8 |
| Total bases |
477,532,385.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
101876 (100.0%) 477.5Mb |
| >Q7 |
97554 (95.7%) 458.8Mb |
| >Q10 |
46105 (45.3%) 222.4Mb |
| >Q12 |
968 (1.0%) 4.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (548) |
| 2 |
13.3 (655) |
| 3 |
13.2 (546) |
| 4 |
13.1 (4171) |
| 5 |
13.0 (1223) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28900 (9.1) |
| 2 |
26070 (10.7) |
| 3 |
24758 (10.9) |
| 4 |
23988 (10.8) |
| 5 |
23844 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot