NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,530.6 |
| Mean read quality |
8.9 |
| Median read length |
4,112.0 |
| Median read quality |
9.8 |
| Number of reads |
60,175.0 |
| Read length N50 |
6,011.0 |
| STDEV read length |
2,843.6 |
| Total bases |
272,627,740.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
60166 (100.0%) 272.6Mb |
| >Q7 |
57879 (96.2%) 263.2Mb |
| >Q10 |
27263 (45.3%) 128.6Mb |
| >Q12 |
540 (0.9%) 2.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (9211) |
| 2 |
13.1 (863) |
| 3 |
13.0 (8895) |
| 4 |
13.0 (9803) |
| 5 |
13.0 (4259) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36872 (8.4) |
| 2 |
28616 (8.9) |
| 3 |
27793 (9.8) |
| 4 |
26053 (8.5) |
| 5 |
23908 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot